simulate_outbreak

eugene.simulate_outbreak(R0, k, n, D, gamma_shape, max_time, days_elapsed_max, max_cases, seed=None)

Simulate an outbreak.

Parameters

R0float

kfloat

nfloat

Dfloat

gamma_shapefloat

max_timefloat

days_elapsed_maxfloat

max_casesfloat

seedint

Returns

timesndarray

Times of incidence measurements

cumulative_incidencendarray

Cumulative incidence (total cases) at each time